392114 Übungen zu Genome-scale algorithmics (Ü) (WiSe 2012/2013)
Contents, comment
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Genome-scale algorithmics, 2 ECTS, 4*3 hours lectures, 2*2 hours exercises
Exercise 1: Home assignments to apply invariant technique in dynamic programming to e.g. adapter filtering, SOLiD vs. normal read overlaps. Algorithm simulations to understand FMindex / search space pruning, developing local alignment version of the search algorithm
Exercise 2: Adding gap-restrictions to co-linear chaining, studying some internal data structures to implement the studied FM-index variants.
You find the exercises for the lecture on the following web page:
http://wiki.techfak.uni-bielefeld.de/gi/Teaching/2012winter/algGR
Requirements for participation, required level
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Die Übungen werden in englischer Sprache gehalten.
Teaching staff
Dates ( Calendar view )
| Frequency | Weekday | Time | Format / Place | Period |
|---|
Subject assignments
| Module | Course | Requirements | |
|---|---|---|---|
| 39-M-Inf-AG Algorithmen in der Genomforschung | Algorithmen in der Genomforschung | Graded examination
|
Student information |
The binding module descriptions contain further information, including specifications on the "types of assignments" students need to complete. In cases where a module description mentions more than one kind of assignment, the respective member of the teaching staff will decide which task(s) they assign the students.
| Degree programme/academic programme | Validity | Variant | Subdivision | Status | Semester | LP | |
|---|---|---|---|---|---|---|---|
| Bioinformatik und Genomforschung / Bachelor | (Enrollment until SoSe 2011) | Individueller Ergänzungsber | Wahl | 5. | unbenotet LP s. Vorlesung | ||
| Bioinformatik und Genomforschung / Master | (Enrollment until SoSe 2012) | Algorithmen in der Genom | Wahlpflicht | 1. | unbenotet LP s. Vorlesung | ||
| Bioinformatik und Genomforschung / Promotion | Indiv. Erg. | Wahl | |||||
| Molekulare Biotechnologie / Diplom | (Enrollment until SoSe 2004) | HS | |||||
| Molekulare Biotechnologie / Master | (Enrollment until SoSe 2012) | Algorithmen in der Genomfors | Wahlpflicht | 1. | unbenotet LP s. Vorlesung | ||
| Naturwissenschaftliche Informatik / Diplom | (Enrollment until SoSe 2004) | Biologie | HS | ||||
| Naturwissenschaftliche Informatik / Master | (Enrollment until SoSe 2012) | Algorithmen in der Genomf | Wahlpflicht | 1. | unbenotet LP s. Vorlesung |
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- Last update basic details/teaching staff:
- Friday, December 11, 2015
- Last update times:
- Thursday, September 26, 2013
- Last update rooms:
- Monday, November 12, 2012
- Type(s) / SWS (hours per week per semester)
- exercise (Ü) / 2
- Department
- Faculty of Technology
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