392151 Engineering Sequence Analysis Algorithms and Workflows for Parallel Computing (V) (WiSe 2011/2012)

Contents, comment

Part I: Introduction
- Review of sequence data types and formats: focus on NGS data types
- Review of sequence Analysis Algorithms and indexing data structures

Part II: Engineering software tools
- Parallel Index construction: I. on multi-core machines
- Parallel Index construction: II. on computer cluster
- Parallel string matching: I. shared index distributed queries
- Parallel string matching: II. distributed index
- Chaining algorithms: sequential and parallel
- Use of GPUs: Case studies
- Task scheduling: Single program multiple data

Part II: Engineering workflows
- Introduction to workflow systems
- Task scheduling and management in workflow systems
- Data management in workflow systems

Part III: Emerging platforms
- Use of Hadoop/ Map-Reduce
- Use of cloud Computing

Requirements for participation, required level

Lehrsprache Englisch

Teaching staff

Dates ( Calendar view )

Frequency Weekday Time Format / Place Period  
weekly Fr 14-16 V6-116 10.10.2011-03.02.2012

Hide passed dates <<

Subject assignments

Degree programme/academic programme Validity Variant Subdivision Status Semester LP  
Bioinformatik und Genomforschung / Master (Enrollment until SoSe 2012) Wahlpflicht I Bioinformatik Wahlpflicht 1. 3. unbenotet  
Naturwissenschaftliche Informatik / Master (Enrollment until SoSe 2012) Vertiefung Informatik I Wahlpflicht 1. 3. unbenotet  
No more requirements
No eLearning offering available
Registered number: 9
This is the number of students having stored the course in their timetable. In brackets, you see the number of users registered via guest accounts.
eKVV participant management:
eKVV participant management is used for this course.
Show details
Address:
WS2011_392151@ekvv.uni-bielefeld.de
This address can be used by teaching staff, their secretary's offices as well as the individuals in charge of course data maintenance to send emails to the course participants. IMPORTANT: All sent emails must be activated. Wait for the activation email and follow the instructions given there.
If the reference number is used for several courses in the course of the semester, use the following alternative address to reach the participants of exactly this: VST_26295765@ekvv.uni-bielefeld.de
Notes:
Additional notes on the electronic mailing lists
Last update basic details/teaching staff:
Friday, December 11, 2015 
Last update times:
Thursday, September 26, 2013 
Last update rooms:
Tuesday, September 13, 2011 
Type(s) / SWS (hours per week per semester)
lecture (V) / 2
Department
Faculty of Technology
Questions or corrections?
Questions or correction requests for this course?
Planning support
Clashing dates for this course
Links to this course
If you want to set links to this course page, please use one of the following links. Do not use the link shown in your browser!
The following link includes the course ID and is always unique:
https://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=26295765
Send page to mobile
Click to open QR code
Scan QR code: Enlarge QR code
ID
26295765