392105 Sequenzanalyse (V) (WiSe 2024/2025)
Contents, comment
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Sequenzen sind allgegenwärtig. Texte und Programme, Genome und Proteine, Webseiten, Polygonzüge, Sprach- und Bildsignale und digitalisiertes Vogelzwitschern werden dargestellt als Zeichenfolgen über einem endlichen Alphabet. Entsprechend vielfältig sind die algorithmischen Fragestellungen. Oft ist dabei der Datenumfang sehr groß, so dass die algorithmische Komplexität von entscheidender praktischer Bedeutung ist.
In der Vorlesung werden Algorithmen zum effizienten Vergleich von Sequenzen und zur Suche exakter und approximativer Muster in Sequenzen behandelt. Viele dieser Algorithmen sind durch bioinformatische Fragestellungen motiviert. Sie finden jedoch auch Anwendungen in anderen Bereichen wie z.B. der Textverarbeitung und der Datenkompression.
Bibliography
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- Das Skript zur Vorlesung (siehe externe Kommentarseite)
- Gusfield, D.: Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology. Cambridge University Press, New York, 1997.
- Setubal, J. and Meidanis, J.: Introduction to Computational Biology. PWS Publishing, Boston, M.A., 1997.
External comments page
Teaching staff
Dates ( Calendar view )
| Frequency | Weekday | Time | Format / Place | Period |
|---|
Subject assignments
| Module | Course | Requirements | |
|---|---|---|---|
| 39-Inf-12 Sequenzanalyse | Sequenzanalyse | Student information | |
| - | Graded examination | Student information | |
| 39-Inf-12_ver1 Sequenzanalyse | Sequenzanalyse | Ungraded examination
Graded examination |
Student information |
| 39-M-MBT12 Spezialisierung Biologie/Chemie/Informatik/Physik/Gesundheitswissenschaften 1 | Spezialisierungsmodule Biologie, Biochemie, Bioinformatik, Chemie und Genomforschung | Student information |
The binding module descriptions contain further information, including specifications on the "types of assignments" students need to complete. In cases where a module description mentions more than one kind of assignment, the respective member of the teaching staff will decide which task(s) they assign the students.
| Degree programme/academic programme | Validity | Variant | Subdivision | Status | Semester | LP | |
|---|---|---|---|---|---|---|---|
| Studieren ab 50 |
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