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Herr Prof. Dr. Jens Stoye: Contact

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1. Faculty of Technology / AG Genominformatik
E-Mail :
jens.stoye@uni-bielefeld.de  
To the Homepage of :
Prof. Dr. Jens Stoye
Phone :
Click here to start the webdialer +49 521 106-3852  
Fax :
+49 521 106-6495  
Phone No. of Secretary :
Click here to start the webdialer +49 521 106-6882 , Secretary's Details
Office :
UHG U10-147 , Locations Map
Office Hours :

nach Vereinbarung

 
2. Center for Biotechnology - CeBiTec / Executive Committee
Function:
member of the executive committee 
E-Mail :
jens.stoye@uni-bielefeld.de  
3. Center for Biotechnology - CeBiTec / Research Group J. Stoye
Function:
Head of Research Group "Genome Informatics" 
E-Mail :
jens.stoye@uni-bielefeld.de  
To the Homepage of :
Prof. Dr. Jens Stoye
4. Center of Excellence - Cognitive Interaction Technology CITEC
Function:
Responsible Investigator  
E-Mail :
stoye@techfak.uni-bielefeld.de  
5. Faculty of Technology / Int. Graduate Program DiDy (GRK 1906)
Function:
Spokesperson 
E-Mail :
jens.stoye@uni-bielefeld.de  
6. Faculty of Technology / Kommissionen und Ausschüsse / Habilitationsausschuss
E-Mail :
stoye@techfak.uni-bielefeld.de  
7. Faculty of Technology / Kommissionen und Ausschüsse / Forschung, wissenschaftlicher Nachwuchs
E-Mail :
stoye@techfak.uni-bielefeld.de  

Curriculum Vitae

Education:

  • 10/1991-05/1995 Diploma studies Informatics in the Natural Sciences, Faculty of Technology, Bielefeld University. Thesis title: Affix Trees (advisor: Prof. Robert Giegerich)
  • 05/1995-01/1997 PhD studies, Faculty of Technology, Bielefeld University. Thesis title: Divide-and-Conquer Multiple Sequence Alignment (advisors: Prof. Andreas Dress, Prof. Robert Giegerich)

Employment:

  • 05/1995-02/1997 Staff scientist at the Interdisciplinary Research Center on Structure Formation (FSPM), Bielefeld University.
  • 03/1997-08/1997 Postdoc at the Research Training Group Structure Formation, FSPM, Bielefeld University.
  • 09/1997-08/1998 Postdoc at the Department of Computer Science, University of California at Davis.
  • 09/1998-02/2001 Postdoc at the Theoretical Bioinformatics division, German Cancer Research Center (DKFZ) Heidelberg.
  • 03/2001-02/2002 Head of junior research group Algorithmic Bioinformatics at the Max Planck Institute for Molecular Genetics, Berlin.
  • since 03/2002 University professor for Genome Informatics, Faculty of Technology, Bielefeld University.

Academic service:

  • since 01/2004 Associate editor of IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
  • 01/2010-10/2013 Associate editor of BMC Bioinformatics

Theses advised (by end of 2015):

  • 43 Bachelor Theses
  • 62 Master and Diploma Theses
  • 30 PhD Theses

Member of conference steering committees:

  • since 09/2012 Workshop on Algorithms in Bioinformatics (WABI)
  • since 10/2014 Bioinformatics Research and Education Workshop (BREW)

Member of conference program committees:

  • GCB: 2000 (co-chair), 2004 (co-chair), 2010, 2011, 2012, 2013, 2014
  • WABI: 2002, 2003, 2004, 2005, 2007, 2008, 2009, 2010, 2011, 2012, 2013 (co-chair), 2014, 2015, 2016, 2017
  • ISMB: 2003, 2004, 2009, 2010, 2012, 2013, 2014, 2015, 2016, 2017
  • RECOMB: 2004, 2006, 2008, 2009, 2012, 2017
  • ECCB: 2004, 2005, 2009, 2012, 2013, 2014, 2015, 2016, 2017
  • RECOMB-CG: 2005, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015 (co-chair), 2016
  • IWBRA/ISBRA: 2006, 2007, 2008, 2009, 2010, 2011
  • CPM: 2006, 2010, 2012 (co-chair), 2013, 2014, 2015
  • SPIRE: 2006, 2010, 2011, 2017
  • ALENEX: 2007
  • IEEE BIBM: 2007, 2013
  • SHORT-SIG/HiTSeq: 2009 (co-chair), 2010 (co-chair), 2011 (co-chair), 2017
  • LATA: 2011, 2012, 2017
  • ACM-BCB: 2011, 2012, 2013
  • RECOMB-Seq: 2012, 2013, 2016
  • ESA: 2012
  • RECOMB-AB: 2012
  • Others: CompLife 2005, ISBB 2006, ICCABS 2010, ITMAB 2011, FAW-AAIM 2013, BSB 2013

Member of conference organizing committeees:

  • GCB: 2000, 2004, 2014 (chair)

Best paper award:

  • CPM 2008: HP Distance via Double Cut and Join (A. Bergeron, J. Mixtacki, J. Stoye)

Invited speaker:

  • JOBIM 2006: Index Structures in Biological Sequence Analysis: From Simplicity to Complexity and Back
  • JOBIM 2009: Computational Short Read Metagenomics
  • BSB 2012: Genome Rearrangement by Double Cut and Join
  • ALGO 2012: Algorithms for Genome Rearrangement by Double Cut and Join
  • MAGE 2013: The potential of family-free genome comparison
  • SocBiN 2014: Family-free genome comparison

Administration:

  • 10/2002-09/2014 Vice-Speaker of the Board of Directors, German Bioinformatics Society (GI-Fachgruppe BIOINF)
  • 10/2002-09/2014 Member of the Faculty Assembly of the Faculty of Technology, Bielefeld University
  • 12/2002-12/2015 Speaker of the Institute for Bioinformatics, Center for Biotechnology (CeBiTec), Bielefeld University
  • since 01/2004 Member of the Board of Directors, Center for Botechnology (CeBiTec), Bielefeld University
  • 10/2002-03/2007 Head of Examination Board, Diploma program Informatics in the Natural Sciences, Faculty of Technology, Bielefeld University
  • 10/2007-09/2012 Head of Examination Board, Master program Informatics in the Natural Sciences, Faculty of Technology, Bielefeld University
  • 04/2007-09/2009 Dean of the Faculty of Technology, Bielefeld University.
  • 10/2009-09/2010 Vice-dean of the Faculty of Technology, Bielefeld University.
  • 10/2010-09/2013 Dean of the Faculty of Technology, Bielefeld University.
  • since 10/2013 Speaker of the International DFG Research Training Group Computational Methods for the Analysis of the Diversity and Dynamics of Genomes, Faculty of Technology, Bielefeld University
  • since 01/2014 Member of the DAAD Selection Committee for Postdoc Fellowships
  • since 12/2015 Speaker of the Research Area Large Scale Genomics and Big Data Bioinformatics, Center for Biotechnology (CeBiTec), Bielefeld University

Curriculum Vitae and Photo

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